6th International Young Scientist Congress (IYSC-2020) will be Postponed to 8th and 9th May 2021 Due to COVID-19. 10th International Science Congress (ISC-2020).  International E-publication: Publish Projects, Dissertation, Theses, Books, Souvenir, Conference Proceeding with ISBN.  International E-Bulletin: Information/News regarding: Academics and Research

HBVO: Human Biological Viruses Ontology

Author Affiliations

  • 1Department of CS and IT, Federal Urdu University of Arts, Sciences and Technology, Karachi, PAKISTAN
  • 2 HIIT, FEST, Hamdard University, Karachi, PAKISTAN
  • 3 National University of Computer and Emerging Sciences, Karachi, PAKISTAN
  • 4 FEST, Hamdard University, Karachi, PAKISTAN

Res. J. Recent Sci., Volume 1, Issue (10), Pages 45-50, October,2 (2012)

Abstract

Biological viruses have recently received a lot of attention especially in sub continent due to some spectacular effects of infections like bird flu, dengue and swine flu. This problem generated a requirement to classify these viruses in some formal form. Therefore, we are proposing an ontology for Human Biological Viruses Ontology (HBVO) that covers all the viruses that belongs to human. The proposed ontology is developed by using the principles of Open Biological Ontologies and will be available in the format of OBO. It can be viewed by using OBO-Edit. To develop HBVO we used the taxonomy developed by the International Committee on Taxonomy of Viruses.

References

  1. Smith B., Ashburner M., Rosse C., Bard J., Bug W., Ceusters W., Goldberg L. J., Eilbeck K., Ireland A., Mungall C.J., et al., The OBO Foundry: Coordinated evolution of ontologies to support biomedical data integration, Nat. Biotech., 25, (2007)
  2. Day-Richter J., Harris M.A. and Haendel M., The Gene Ontology OBO-Edit Working Group and Lewis S., OBO-Edit—an ontology editor for biologists, Bioinformatics, 32, 2198–2200 (2007)
  3. Siddiqui M.S., Shaikh Z.A. and Memon A.R., Towards the development of human community ontology, WCSE 2009, Xiamen, China, , 8-12 (2009)
  4. Siddiqui M.S., Shaikh Z.A. and Memon A.R., Towards the development of community ontology, IEEE INMIC 2008, Bahria University, Karachi, Pakistan, 357-360 (2008)
  5. Valdivia-Granda W. and Larson F., ORION-VIRCAT: A tool for mapping ICTV and NCBI taxonomies, Database(Oxford), (2009)
  6. Carstens E. B., Ratification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses, Arch. Virol., 155, 133–146 (2009)
  7. Carstens E. B. and Ball L. A., Ratification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses, Arch. Virol., 154, 1181–1188 (2009)
  8. Altan-Bonnet, A., How RNA Viruses Copy Themselves: Hijack Cellular Enzyme to Create Viral Replication Factories on Cell Membranes, Science Daily, May 30, (2010)
  9. Gruber T., Ontology. Entry in the Encyclopedia of Database Systems, Ling Liu and M. Tomer Ozsu (Eds.), Springer-Verlag., (2008)
  10. Raffat S. K, Siddiqui M. S, Shaikh Z.A, Memon A.R., Ontology: A Scientific Classification Technique, Sindh Uni. Res. J., 44(2AB), 63-68 (2012)
  11. Islam N., Siddiqui M. S. and Shaikh Z. A., TODE–A Dot Net Based Tool for Ontology Development and Editing, ICCET 2010, International Convention Centre of UESTC, Chengdu, China, , 229-233 (2010)
  12. Black J., Bio-ontology—fast and furious, Nat. Biotech., 22, (2004)
  13. Smith B., Ceusters W., Klagges B., Kohler J., Kumar A., Lomax J., Mungall C., Neuhaus F., Rector A. L. and Rosse, C., Relation in biomedical ontologies, Gen. Bio., (2005)
  14. Hartung M., Kirsten T., Gross A. and Rahm E., OnEX: Exploring changes in life science ontologies, BMC Bioinformatics, 10, (2009)
  15. The Gene Ontology Consortium, The Gene Ontology in 2010, Nucl. Acids Res., 38, D331–D335 (2010)
  16. The Gene Ontology Consortium, The Gene Ontology project in 2008, Nucl. Acids Res., 36, (2008)
  17. Hartmann S., Kohler H. and Wang J., Ontology consolidation in bioinformatics, APCCM 2010, Brisbane, Australia, (2010)
  18. Moore B., Fan G. and Eilbeck K., SOBA: sequence ontology bioinformatics analysis, Nucl. Acids Res., 38, W161–W164 (2010)
  19. Eilbeck K., Lewis S. E., Mungall C. J., Yandell M., Stein L., Durbin R. and Ashburner M., The Sequence Ontology: A tool for the unification of genome annotations, Gen.Bio., , (2005)
  20. Degtyarenoko K., Matos P., Ennis M., Hastings J., Zbinden M., McNaught A., Alcantara R., Darsow M., Guedj M. and Ashburner, M., ChEBI: a database and ontology for chemical entities of biological interest, Nucl. Acid Res., 36, D344–D350 (2007)
  21. Bodenreider O. and Burgun A., Towards desiderata for an ontology of diseases for the annotation of biological datasets, Int. Conf. on Bio. Onto., Buffalo, New York, USA, (2009)
  22. Leontis N. B., Altman R. B., Berman H. M., Bernner S. E., Brown J. W., Engelke D. R., Harvey S. C., Holbrook S. R., Jossinet F., Lewis S. E., et al., The RNA Ontology Consortium: an open invitation to the RNA community, RNA12, 533-541 (2006)
  23. Batcheor C., Bittner T., Eilbeck K., Mungall C., Richardson J., Knight R., Stombaugh J., Zirbel C., Westhof E. and Leontis, N., The RNA Ontology (RNAO): An ontology for integrating RNA sequence and structure data, Nat. Precedings: hdl:10101/npre.2009.3561.1, (2009)
  24. Raffat S. K, Siddiqui M. S, Shaikh Z.A, Memon A.R., Towards the development of Biological Viruses Community Ontology (BVCO), J. of Comp., , 125–129 (2011)
  25. Soldatova L.N and King R.D., Are the current ontologies in biology good ontologies?, Nat. Biotech., 23, (2005)
  26. Noy N. F. and McGuinness D. L., Ontology Development 101: A guide to creating your first ontology, Stanford Knowledge Systems Laboratory Technical Report, KSL-01-05, Stanford University, USA, (2001)
  27. Alterovitz G., Xiang M., Hill D. P., Lomax J., Liu J., Cherkassky M., Dreyfuss J., Mungall C., Harris M. A., Dolan M. E., et al., Ontology engineering, Nat. Biotech., 28, (2010)
  28. Courtot J. M., Gibson F., Lister A. L., Malone J., Schober D., Brinkman R. R. and Ruttenberg A., MIREOT: Minimum information to reference external ontology terms, Int. Conf. on Bio. Onto., University at Buffalo, NY, USA, (2009)
  29. Natale D.A., Arighi C. N., Barker W. C., Blake J., Chang T., Hu Z., Liu H., Smith, B. and Wu C. H., Framework for a Protein Ontology, BMC Bioinformatics, , (2007)
  30. Kalpa S., Health IT in Indian Healthcare System: A New Initiative, Res.J.Recent Sci.,1(6), 83-86 (2012)